#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	CHB10_P24_140728	CHB11_P25_140722	CHB12_P23_140809	CHB5_P25_140801	CHB6_P37_140722	CHB8_P26_140723	CHB9_P24_140728	CSES12_P14_140616	CSES15_P26_140611	CSES25_P25_150119	CSES2_P18_140611	CSES4_P27_140616	CSES6_P15_140809	CSES7_P14_140722	CT1_P40_140809	CT2_P11_140622	CT3_P17_140809	CT4_P15_140622	ESI017_P31_140619	ESI035_P36_140617	ESI049_P33_140612	ESI051_P35_140610	ESI053_P28_140611	Elf1_P12_140624	Genea15_P20_150110	Genea16_P17_150104	Genea2_P19_150119	Genea42_P19_150107	Genea43_P12_150104	Genea47_P10_150104	Genea48_P8_150110	Genea52_P11_150110	Genea57_P13_150110	HB9_GFP	NKX	HS1001_P14	HS346_P25_140704	HS401_P25_140619	HS420_P24_140623	HS975_P8	HS980_P8	HS983a_P7	HS999_P12	HUES3_lab_stock	HUES42_P22_131008	HUES44_P16_131008	HUES45_P21_131206	HUES48_P33_150124	HUES49_P25_130903	HUES53	HUES62	HUES64	HUES65_P15_131027	HUES66_P15_131015	HUES68_P27_11/12/13	HUES69_P21_9/22/13	HUES70_P27_131019	HUES71_P28_150210	HUES72_P20_150119	HUES73_P28_150210	HUES74_P7_150201	HUES75_P7_150124	HUES9-FEZF2-FYP_AM_140720	I3_P27_150210	I4_P29_150210	KCL019_8_14_1010	KCL020_P30_11_1121	KCL022_P22_11_1209	KCL031_P17_12_0710	KCL032_P7_14_1015	KCL033_P17_12_0408	KCL034_P17_13_1020	KCL037_P7_14_1015	KCL038_P9_14_1015	KCL039_P8_14_1015	KCL040_P22_12_0905	MShef11_P18_14_0715	MShef12_P16	MShef13_P16_14_0715	MShef2_P18_11_1121	MShef3_P10_14_0803	MShef4_P35_13_0524	MShef5_P8_14_0803	MShef7_P13_14_0715	MShef8_P14_14_0715	Man11_P27	Man12_P24	Mel1_P20_150107	Mel2_P28_150121	Mel3_P38_150121	Mel4_P37_150119	Mshef10_P22	Mshef3_P22	RUES1_P25_140730	RUES2_P18_170730	HUES63	SOD1A4V_TALEN_introduced	SOD1A4V_corrected	Shef3.2_P13_140801	Shef6.1_P12_140725	UCSF4_P19_140613	UM14-1_P26_150115	UM14-2_P31_150124	UM22-2_P26_150107	UM33-4_P25_150107	UM4-6_P15_150116	UM77-2_P12_150107	WA01_P23_5/28/14	WA09_P25_5/28/14	WA13_P33_140530	WA14_P21_131206	WA15_P31_140529	WA17_P12_140530	WA18_P9_140530	WA19_P11_140529	WA20_P23_140613	WA21_P28_5/28/14	WA22_P14_140530	WA23_P20_140606	WA24_P15_5/28/14	WA25_P14_140606	WA26_P15_140606	WA27_P15_140613	WA7_P33_140529	WIBR1_P34_140608	WIBR2_P33_140617	WIBR3_P23_140624	WIBR5_P13_140611	WIBR6_P11_140617
10	102034963	rs189813357	T	C	437.72	PASS	AC=2;AF=7.752e-03;AN=258;BaseQRankSum=0.815;CCC=258;ClippingRankSum=-6.790e-01;DB;DP=3556;FS=0.983;GQ_MEAN=66.60;GQ_STDDEV=24.77;HWP=1.0000;InbreedingCoeff=-0.0078;MLEAC=2;MLEAF=7.752e-03;MQ=60.00;MQ0=0;MQRankSum=0.823;NCC=0;POSITIVE_TRAIN_SITE;QD=6.63;ReadPosRankSum=1.58;VQSLOD=3.07;culprit=QD	GT:AD:DP:GQ:PL	0/0:32,0:32:61:0,61,819	0/0:35,0:35:68:0,68,1009	0/0:33,0:33:62:0,62,863	0/0:29,0:29:69:0,69,884	0/0:28,0:28:62:0,62,893	0/0:27,0:27:62:0,62,819	0/0:32,0:32:64:0,64,950	0/0:23,0:23:60:0,60,748	0/0:27,0:27:64:0,64,826	0/0:23,0:23:63:0,63,699	0/0:37,0:37:60:0,60,900	0/0:30,0:30:61:0,61,860	0/0:28,0:28:61:0,61,798	0/0:25,0:25:67:0,67,828	0/0:30,0:30:64:0,64,916	0/0:30,0:30:73:0,73,934	0/0:29,0:29:67:0,67,803	0/0:29,0:29:62:0,62,878	0/0:35,0:35:71:0,71,998	0/0:31,0:31:60:0,60,857	0/0:27,0:27:62:0,62,798	0/0:27,0:27:65:0,65,846	0/0:29,0:29:65:0,65,803	0/0:27,0:27:65:0,65,829	0/0:20,0:20:60:0,60,632	0/0:30,0:30:67:0,67,903	0/0:24,0:24:60:0,60,702	0/0:24,0:24:65:0,65,760	0/0:23,0:23:62:0,62,748	0/0:29,0:29:60:0,60,881	0/0:25,0:25:67:0,67,791	0/0:27,0:27:61:0,61,825	0/0:25,0:25:69:0,69,814	0/0:25,0:25:64:0,64,785	0/0:22,0:22:60:0,60,711	0/0:18,0:18:48:0,48,572	0/0:26,0:26:62:0,62,901	0/0:25,0:25:60:0,60,784	0/0:31,0:31:62:0,62,842	0/0:24,0:24:72:0,72,719	0/0:24,0:24:64:0,64,677	0/0:34,0:34:73:0,73,969	0/0:23,0:23:63:0,63,686	0/0:25,0:25:61:0,61,681	0/0:30,0:30:61:0,61,946	0/1:23,13:36:99:299,0,665	0/0:28,0:28:62:0,62,864	0/0:22,0:22:61:0,61,689	0/0:35,0:35:61:0,61,973	0/0:20,0:20:54:0,54,810	0/0:26,0:26:63:0,63,797	0/0:25,0:25:60:0,60,725	0/0:36,0:36:76:0,76,944	0/0:25,0:25:62:0,62,798	0/0:33,0:33:64:0,64,930	0/0:27,0:27:61:0,61,714	0/0:25,0:25:62:0,62,708	0/0:27,0:27:67:0,67,841	0/0:25,0:25:60:0,60,792	0/0:24,0:24:63:0,63,684	0/0:25,0:25:63:0,63,833	0/0:26,0:26:61:0,61,805	0/0:29,0:29:66:0,66,830	0/0:23,0:23:61:0,61,748	0/0:27,0:27:65:0,65,738	0/0:27,0:27:72:0,72,840	0/0:23,0:23:61:0,61,691	0/0:26,0:26:69:0,69,756	0/0:29,0:29:60:0,60,774	0/0:26,0:26:63:0,63,808	0/0:25,0:25:63:0,63,738	0/0:31,0:31:62:0,62,873	0/0:25,0:25:61:0,61,765	0/0:49,0:49:99:0,106,1371	0/1:21,9:30:99:200,0,556	0/0:29,0:29:64:0,64,862	0/0:27,0:27:60:0,60,840	0/0:30,0:30:61:0,61,863	0/0:22,0:22:60:0,60,725	0/0:22,0:22:60:0,60,698	0/0:24,0:24:61:0,61,734	0/0:24,0:24:60:0,60,841	0/0:25,0:25:63:0,63,765	0/0:14,0:14:33:0,33,429	0/0:26,0:26:60:0,60,805	0/0:24,0:24:66:0,66,837	0/0:25,0:25:66:0,66,754	0/0:27,0:27:61:0,61,784	0/0:27,0:27:63:0,63,807	0/0:27,0:27:60:0,60,800	0/0:24,0:24:66:0,66,756	0/0:31,0:31:67:0,67,899	0/0:23,0:23:65:0,65,741	0/0:33,0:33:62:0,62,978	0/0:23,0:23:60:0,60,722	0/0:30,0:30:64:0,64,887	0/0:26,0:26:61:0,61,853	0/0:28,0:28:67:0,67,865	0/0:32,0:32:67:0,67,948	0/0:50,0:50:90:0,90,1582	0/0:26,0:26:61:0,61,736	0/0:25,0:25:61:0,61,727	0/0:29,0:29:60:0,60,896	0/0:26,0:26:61:0,61,767	0/0:30,0:30:62:0,62,927	0/0:22,0:22:60:0,60,695	0/0:30,0:30:71:0,71,857	0/0:35,0:35:75:0,75,983	0/0:24,0:24:62:0,62,759	0/0:26,0:26:65:0,65,813	0/0:25,0:25:63:0,63,748	0/0:35,0:35:69:0,69,984	0/0:30,0:30:63:0,63,834	0/0:31,0:31:61:0,61,943	0/0:30,0:30:63:0,63,860	0/0:32,0:32:68:0,68,985	0/0:25,0:25:61:0,61,715	0/0:32,0:32:72:0,72,950	0/0:22,0:22:60:0,60,891	0/0:23,0:23:61:0,61,753	0/0:25,0:25:68:0,68,733	0/0:18,0:18:49:0,49,671	0/0:29,0:29:62:0,62,798	0/0:28,0:28:72:0,72,894	0/0:29,0:29:63:0,63,867	0/0:25,0:25:63:0,63,902	0/0:29,0:29:64:0,64,905	0/0:37,0:37:64:0,64,1088	0/0:32,0:32:73:0,73,940
10	126085976	rs8182	A	G	8336.06	PASS	AC=22;AF=0.085;AN=258;BaseQRankSum=-8.820e-01;CCC=258;ClippingRankSum=-2.200e-01;DB;DP=3652;FS=1.093;GQ_MEAN=107.53;GQ_STDDEV=104.57;HWP=1.0000;InbreedingCoeff=0.0062;MLEAC=22;MLEAF=0.085;MQ=60.00;MQ0=0;MQRankSum=0.057;NCC=0;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=0.580;VQSLOD=3.33;culprit=InbreedingCoeff	GT:AD:DP:GQ:PL	0/0:27,0:27:63:0,63,812	0/0:33,0:33:74:0,74,1043	0/1:13,25:38:99:625,0,314	0/0:23,0:23:60:0,60,884	0/0:22,0:22:60:0,60,642	0/1:22,15:37:99:325,0,559	0/0:28,0:28:74:0,74,853	0/0:25,0:25:69:0,69,790	0/0:26,0:26:62:0,62,759	0/0:21,0:21:60:0,60,762	0/0:35,0:35:81:0,81,1133	0/0:29,0:29:65:0,65,896	0/0:24,0:24:62:0,62,761	0/0:28,0:28:64:0,64,912	0/0:31,0:31:63:0,63,872	0/0:30,0:30:62:0,62,947	0/0:26,0:26:61:0,61,861	0/0:25,0:25:63:0,63,856	0/0:39,0:39:88:0,88,1143	0/1:20,17:37:99:422,0,470	0/0:24,0:24:60:0,60,830	0/0:30,0:30:65:0,65,955	0/0:27,0:27:60:0,60,938	0/0:24,0:24:63:0,63,818	0/1:19,17:36:99:380,0,446	0/0:24,0:24:66:0,66,843	0/0:22,0:22:63:0,63,667	0/1:11,17:28:99:378,0,238	0/0:26,0:26:69:0,69,798	0/1:15,11:26:99:242,0,373	0/0:28,0:28:67:0,67,902	0/0:22,0:22:60:0,60,700	0/0:24,0:24:61:0,61,763	0/0:30,0:30:64:0,64,920	0/0:25,0:25:63:0,63,723	0/0:23,0:23:60:0,60,696	0/0:28,0:28:64:0,64,912	0/1:13,24:37:99:511,0,314	0/0:24,0:24:62:0,62,778	0/0:27,0:27:62:0,62,806	0/0:24,0:24:63:0,63,754	0/0:24,0:24:62:0,62,802	0/0:24,0:24:60:0,60,785	0/0:24,0:24:60:0,60,783	0/0:27,0:27:61:0,61,904	0/0:23,0:23:60:0,60,733	0/0:30,0:30:74:0,74,956	0/0:25,0:25:61:0,61,783	0/0:34,0:34:70:0,70,1046	0/0:24,0:24:63:0,63,747	0/1:14,21:35:99:449,0,323	0/0:24,0:24:62:0,62,769	0/0:29,0:29:61:0,61,871	0/0:25,0:25:60:0,60,693	0/0:28,0:28:62:0,62,909	0/0:22,0:22:64:0,64,697	0/1:15,11:26:99:251,0,324	0/0:23,0:23:64:0,64,684	0/1:23,19:42:99:371,0,632	0/0:28,0:28:60:0,60,836	0/0:29,0:29:62:0,62,834	0/0:25,0:25:62:0,62,756	0/0:29,0:29:72:0,72,982	0/0:27,0:27:62:0,62,901	0/0:29,0:29:68:0,68,877	0/1:20,26:46:99:647,0,479	0/0:30,0:30:69:0,69,912	0/0:24,0:24:61:0,61,793	0/0:29,0:29:71:0,71,906	0/0:31,0:31:71:0,71,1059	0/0:21,0:21:60:0,60,652	0/0:24,0:24:60:0,60,795	0/1:25,14:39:99:269,0,690	0/0:47,0:47:99:0,120,1800	0/0:24,0:24:64:0,64,945	0/0:24,0:24:60:0,60,808	0/0:24,0:24:61:0,61,723	0/0:27,0:27:61:0,61,787	0/0:22,0:22:60:0,60,868	0/0:25,0:25:62:0,62,808	0/0:29,0:29:62:0,62,910	0/0:22,0:22:60:0,60,784	0/0:27,0:27:65:0,65,836	0/0:25,0:25:63:0,63,773	0/0:29,0:29:75:0,75,871	0/0:27,0:27:69:0,69,809	0/0:29,0:29:67:0,67,850	0/0:28,0:28:71:0,71,811	0/0:27,0:27:66:0,66,842	0/0:22,0:22:60:0,60,699	0/0:22,0:22:60:0,60,637	0/0:28,0:28:65:0,65,764	0/0:28,0:28:60:0,60,790	0/0:27,0:27:60:0,60,807	0/1:15,10:25:99:229,0,386	0/1:28,18:46:99:345,0,682	0/0:23,0:23:61:0,61,741	0/0:28,0:28:60:0,60,843	0/0:24,0:24:69:0,69,748	0/0:46,0:46:88:0,88,1593	0/0:28,0:28:61:0,61,953	0/0:26,0:26:62:0,62,829	0/0:29,0:29:72:0,72,861	0/1:14,17:31:99:381,0,374	0/0:28,0:28:61:0,61,769	0/0:23,0:23:66:0,66,716	0/1:19,17:36:99:375,0,469	0/0:24,0:24:62:0,62,780	0/0:34,0:34:75:0,75,1035	0/0:25,0:25:60:0,60,884	0/0:33,0:33:71:0,71,955	0/0:31,0:31:67:0,67,1007	0/0:27,0:27:62:0,62,868	1/1:0,32:32:94:810,94,0	0/0:30,0:30:60:0,60,852	0/0:28,0:28:66:0,66,880	0/0:25,0:25:60:0,60,767	0/1:16,16:32:99:314,0,416	0/1:21,24:45:99:594,0,506	0/0:31,0:31:64:0,64,942	0/1:21,23:44:99:460,0,499	0/1:15,11:26:99:236,0,346	0/0:30,0:30:69:0,69,936	0/0:22,0:22:60:0,60,720	0/0:26,0:26:62:0,62,836	0/0:28,0:28:65:0,65,871	0/0:26,0:26:64:0,64,890	0/0:24,0:24:64:0,64,805	0/0:25,0:25:63:0,63,778
10	129921195	rs1063536	A	T	12986.34	PASS	AC=25;AF=0.097;AN=258;BaseQRankSum=0.176;CCC=258;ClippingRankSum=-2.820e-01;DB;DP=3692;FS=0.000;GQ_MEAN=125.19;GQ_STDDEV=146.17;HWP=0.6592;InbreedingCoeff=0.0699;MLEAC=25;MLEAF=0.097;MQ=60.00;MQ0=0;MQRankSum=-1.760e-01;NCC=0;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.385;VQSLOD=3.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,13:30:99:353,0,457	0/0:32,0:32:70:0,70,1018	0/0:23,0:23:61:0,61,772	0/0:22,0:22:63:0,63,699	0/0:24,0:24:60:0,60,829	0/0:28,0:28:62:0,62,819	0/0:28,0:28:69:0,69,828	0/0:23,0:23:63:0,63,685	0/0:24,0:24:65:0,65,790	0/0:28,0:28:72:0,72,836	0/0:41,0:41:98:0,98,1283	0/1:21,21:42:99:604,0,615	0/0:27,0:27:64:0,64,849	0/0:23,0:23:62:0,62,722	0/1:26,16:42:99:390,0,728	1/1:0,40:40:99:1250,120,0	0/0:22,0:22:60:0,60,688	0/0:31,0:31:63:0,63,1021	0/0:33,0:33:61:0,61,977	0/0:22,0:22:63:0,63,745	0/0:27,0:27:63:0,63,825	0/0:29,0:29:67:0,67,903	0/0:30,0:30:66:0,66,898	0/0:25,0:25:64:0,64,836	0/0:24,0:24:67:0,67,759	0/0:24,0:24:68:0,68,735	0/1:16,28:44:99:718,0,405	0/1:17,19:36:99:523,0,436	0/1:14,23:37:99:610,0,343	0/0:23,0:23:60:0,60,742	0/0:21,0:21:63:0,63,643	0/0:24,0:24:63:0,63,872	0/1:17,11:28:99:285,0,463	0/1:23,16:39:99:416,0,658	0/0:25,0:25:63:0,63,746	0/0:27,0:27:47:0,47,823	0/0:31,0:31:62:0,62,973	0/1:13,26:39:99:748,0,300	0/0:28,0:28:63:0,63,906	1/1:0,38:38:99:1217,114,0	0/0:22,0:22:62:0,62,655	0/0:24,0:24:60:0,60,696	0/0:24,0:24:66:0,66,784	0/1:19,17:36:99:446,0,513	0/0:28,0:28:61:0,61,872	0/0:29,0:29:71:0,71,910	0/0:25,0:25:61:0,61,712	0/0:27,0:27:64:0,64,870	0/0:23,0:23:63:0,63,794	0/0:25,0:25:60:0,60,754	0/0:26,0:26:64:0,64,861	0/0:22,0:22:60:0,60,716	0/0:31,0:31:61:0,61,900	0/0:22,0:22:60:0,60,645	0/0:29,0:29:62:0,62,817	0/1:15,17:32:99:511,0,428	0/1:16,11:27:99:254,0,374	0/1:25,17:42:99:414,0,644	0/0:28,0:28:72:0,72,880	0/0:26,0:26:70:0,70,785	0/0:27,0:27:65:0,65,842	0/0:34,0:34:70:0,70,991	0/0:27,0:27:64:0,64,795	0/0:23,0:23:61:0,61,658	0/0:23,0:23:69:0,69,620	0/0:26,0:26:62:0,62,902	0/0:30,0:30:63:0,63,912	0/0:29,0:29:63:0,63,842	0/0:30,0:30:64:0,64,861	0/0:26,0:26:63:0,63,761	0/0:16,0:16:43:0,43,504	0/0:27,0:27:61:0,61,798	0/0:24,0:24:61:0,61,727	0/1:36,29:65:99:742,0,962	0/0:26,0:26:72:0,72,814	0/0:23,0:23:69:0,69,715	0/0:24,0:24:61:0,61,710	0/0:28,0:28:69:0,69,832	0/0:22,0:22:60:0,60,725	0/0:27,0:27:60:0,60,774	0/0:27,0:27:66:0,66,784	0/0:28,0:28:62:0,62,801	0/0:26,0:26:62:0,62,804	0/0:25,0:25:61:0,61,774	0/0:24,0:24:60:0,60,778	0/0:22,0:22:63:0,63,712	0/0:24,0:24:63:0,63,945	0/0:24,0:24:66:0,66,811	0/0:24,0:24:60:0,60,706	0/0:28,0:28:69:0,69,863	0/0:24,0:24:61:0,61,783	0/0:25,0:25:61:0,61,676	0/0:27,0:27:65:0,65,809	0/0:30,0:30:64:0,64,932	0/0:28,0:28:67:0,67,804	0/0:35,0:35:69:0,69,1058	0/1:21,18:39:99:497,0,602	0/1:20,21:41:99:536,0,515	0/0:28,0:28:64:0,64,882	0/0:38,0:38:74:0,74,1055	0/1:14,21:35:99:582,0,317	0/0:24,0:24:60:0,60,723	0/0:24,0:24:69:0,69,898	0/0:22,0:22:60:0,60,758	0/0:27,0:27:63:0,63,839	0/0:29,0:29:64:0,64,899	0/1:11,17:28:99:501,0,276	0/1:26,26:52:99:671,0,707	0/1:27,19:46:99:491,0,737	0/0:29,0:29:53:0,53,823	0/0:27,0:27:63:0,63,738	0/0:24,0:24:65:0,65,780	0/0:24,0:24:63:0,63,780	0/0:28,0:28:71:0,71,817	0/0:30,0:30:74:0,74,1013	0/0:27,0:27:72:0,72,923	0/0:30,0:30:73:0,73,877	0/0:25,0:25:64:0,64,820	0/0:23,0:23:63:0,63,773	0/0:29,0:29:69:0,69,915	0/0:24,0:24:61:0,61,649	0/0:23,0:23:63:0,63,727	0/0:27,0:27:64:0,64,891	0/0:30,0:30:71:0,71,1038	0/0:23,0:23:60:0,60,892	0/1:25,21:46:99:532,0,670	0/0:26,0:26:60:0,60,829	0/0:26,0:26:62:0,62,844	0/0:24,0:24:68:0,68,943
