Bug-Database: https://github.com/dib-lab/khmer/issues
Bug-Submit: https://github.com/dib-lab/khmer/issues/new
Changelog: https://raw.githubusercontent.com/dib-lab/khmer/master/ChangeLog 
Contact: khmer-project@idyll.org
Funding: AFRI Competitive Grant no. 2010-65205-20361 from the USDA NIFA, National Human Genome Research Institute of the National Institutes of Health under Award Number R01HG007513
Name: khmer
Reference:
- Author: >
   Crusoe, Michael R. and Alameldin, Hussien F. and Awad, Sherine and Bucher,
   Elmar and Caldwell, Adam and Cartwright, Reed and Charbonneau, Amanda and
   Constantinides, Bede and Edvenson, Greg and Fay, Scott and Fenton, Jacob
   and Fenzl, Thomas and Fish, Jordan and Garcia-Gutierrez, Leonor and Garland,
   Phillip and Gluck, Jonathan and González, Iván and Guermond, Sarah
   and Guo, Jiarong and Gupta, Aditi and Herr, Joshua R. and Howe, Adina and
   Hyer, Alex and Härpfer, Andreas and Irber, Luiz and Kidd, Rhys and Lin, David
   and Lippi, Justin and Mansour, Tamer and McA'Nulty, Pamela and McDonald, Eric
   and Mizzi, Jessica and Murray, Kevin D. and Nahum, Joshua R. and Nanlohy,
   Kaben and Nederbragt, Alexander Johan and Ortiz-Zuazaga, Humberto and Ory,
   Jeramia and Pell, Jason and Pepe-Ranney, Charles and Russ, Zachary N and
   Schwarz, Erich and Scott, Camille and Seaman, Josiah and Sievert, Scott and
   Simpson, Jared and Skennerton, Connor T. and Spencer, James and Srinivasan,
   Ramakrishnan and Standage, Daniel and Stapleton, James A. and Stein, Joe and
   Steinman, Susan R and Taylor, Benjamin and Trimble, Will and Wiencko, Heather
   L. and Wright, Michael and Wyss, Brian and Zhang, Qingpeng and zyme, en and
   Brown, C. Titus
  Title: "The khmer software package: enabling efficient sequence analysis"
  Publisher: F1000Research
  Year: 2015
  DOI: 10.12688/f1000research.6924.1
  URL: http://dx.doi.org/10.12688/f1000research.6924.1
  Type: article
- Author: >
   Pell, Jason and Hintze, Arend and Canino-Koning, Rosangela and
   Howe, Adina and Tiedje, James M. and Brown, C. Titus
  title: >
   Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
  Volume: 109
  Number: 33
  Pages: 13272-13277
  Year: 2012
  DOI: 10.1073/pnas.1121464109
  Eprint: http://www.pnas.org/content/109/33/13272.full.pdf
  Journal: Proceedings of the National Academy of Sciences
  Type: article
  URL: http://www.pnas.org/content/109/33/13272
- Author: >
   C. Titus Brown and Adina Howe and Qingpeng Zhang and Alexis B.
   Pyrkosz and Timothy H. Brom
  Title: >
   A Reference-Free Algorithm for Computational Normalization of
   Shotgun Sequencing Data
  Year: 2012
  url: http://arxiv.org/abs/1203.4802
  Eprint: http://arxiv.org/pdf/1203.4802v2
- Author: 
   Zhang, Qingpeng AND Pell, Jason AND Canino-Koning, Rosangela
   AND Howe, Adina Chuang AND Brown, C. Titus
  Journal: PLoS ONE
  Title: >
   These Are Not the K-mers You Are Looking For: Efficient Online
   K-mer Counting Using a Probabilistic Data Structure
  Year: 2014
  Month: 07
  Volume: 9
  DOI: 10.1371/journal.pone.0101271
  Number: 7
  Type: article
  Eprint: http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0101271&representation=PDF
- Author: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut
  Title: SeqAn An efficient, generic C++ library for sequence analysis
  Journal: BMC Bioinformatics
  Volume: 9
  Year: 2008
  Number: 1
  Pages: 11
  Type: article
  DOI: 10.1186/1471-2105-9-11
  PMID: 18184432
  ISSN: 1471-2105
- Author: Qingpeng Zhang and Sherine Awad and C. Titus Brown
  Title: >
   Crossing the streams: a framework for streaming analysis of short DNA
   sequencing reads
  Year: 2015
  eprint: PeerJ Preprints 3:e1100
  url: https://dx.doi.org/10.7287/peerj.preprints.890v1
Repository-Browse: https://github.com/dib-lab/khmer
Repository: https://github.com/dib-lab/khmer.git
Registry:
- Name: SciCrunch
  Entry: SCR_001156
- Name: bio.tools
  Entry: khmer
- Name: OMICtools
  Entry: OMICS_02560
